Ll_transcript_493417

• Id Trinity: TRINITY_DN52843_c2_g5_i1
• Name Transcript: Ll_transcript_493417
• Sequence: ATTATACTTCATCCCACAGCAATAATTGAACTACATTGTACAGCTGAAAATAGGGATCAAAAAATAAAAAATGGAGGGCATTGAAGTGAGTGAAAGAAGT TTGGGGAATTTAGTATAAGATGAGGTTTAATAAGAAAATATAAAAAATAATGATGTATAGATATTGTATTGTAATAATACGTTTTAGTCCATTCAGCGCG TTGATAGTGTATAGTTGAAGAAGAGTGTTTTTATGTATGAGAAGTTGAAGAGTGTTTTGTTGATTTATTTCAAGAAACAAAACAAAAGTTGAGATCTGAG TTACATTGAGGTGATGGGTGAAGAGTTGGTTAAGAAAGACGATGACCGCGACGATGAGTATGATTATTCACCATTTTCGGGGATTGAAAAAGGTGCTGTT CTTCAAGAAGCCAGGGTTTTCAATGATCCACAACTACATCCCACAACATGTTCTCAGGTCATCACCAAACTTCTATACCTGTTGAATCAAGGAGAGACAT TTACAAAGGTTGAAGCCACAGAAGTTTTCTTTGCTGTCACTAAGCTTTTCCAGTCTAAAGATATGGGATTAAGAAGAATGGTCTATCTGATAATAAAGGA GATTTCCCCATCTGCAGATGAGGTCATTATTGTCACCAGCTCCCTCATGAAGGACATGAATAGCAAGATTGATATGTACAGGGCAAATGCAATTCGAGTG CTTTGTCGTATCACCGATGGAACTCTCCTTACCCAAATTGAGAGATATTTGAAACAAGCTATTGTAGATAAGAATCCAGTTGTTGCAAGTGCTGCCCTAG TTAGTGGCATTCATATACTCCAGACCAACCCTGAAATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGCTCTTGTACAATT TCATGCACTGGCTTTGCTACATCAGATACG
• Tissue: pods
• Gene name: LI_gene_196213;
• Additional information: details;

Expression of Ll_transcript_493417

FPKM

• PAB: 4.1
• PNAB: 29.8
• PS1: 24.1
• PS2: 7.7
• PS3: 12.6
• PW1: 20.9
• PW2: 19.1
• PW3: 11.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_493417

• Blastp: Coatomer subunit gamma from Arabidopsis with 88.29% of identity
• Blastx: Coatomer subunit gamma from Arabidopsis with 88.29% of identity
• Eggnog: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity)(COG5240)
• Kegg: Link to kegg annotations (AT4G34450)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019416472.1)
• Pfam: Adaptin N terminal region (PF01602.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;