| Id Trinity | TRINITY_DN52867_c7_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_494009 |
| Sequence | AGCAGCTGCACGTCCTCTGAACTGGCAAAAGTACTGTTTGAGGCATGGAGATATTTTGTCCTTCCTGATGAATGGGGTATTTTATTTTGGAGAAGAGTCT GTTATTCAGACTCTTAAACTTCTTAATCTAGCCTTCTATACAGGAAAGGATAATAGTCACACTTCACAAAAAACAGATTCAGCAGATGTGATCTCAATCA AATCAAGTACCACACCTCAAGAGTCAAAGAAGAAAAAGAAGGGTGTAGATGGCTCTGAATCTGGTTCTGAGAAATCCTATTTGGATATGGAAGCACTCGT AGATATCTTCAGTGACAAGAATGGAGATGCCTTACAACAATTCATAGATTGTTTTCTTCTGGAGTGGAATTCAAGCACTGTGCGTGGAGAGGCCAAACTA GTCCTGTGTGGTGTCTGGCATCATGCTAAACCAGCATTCAAAGACACTATGTTAATGTCTCTCCTTGAAAAAGTTAAATTCCTCCCATTGTATGGTCAGA ATATTGTGGAGTATACTGAACTCGTGACGTGGTTGCTTGGAAAATCCCCTGATAGTGGCTCAAAACACCAGATTTATGAACTTGTGGGCCGATGCTTGAC GCCCGGTGTAATTAAGTGCATATTTGAGACACTCCATTCACAGAATGAGCTGTTAGCTAACCATCCAAATTCCTGCATCTATAATACTTTGAGTGGCGTA GTGGAATTTGATGGGTATTATCTTGAGAGTGAACCTTGTGTTGCCTGCAGCTCCCCTGAAGTACCTTACAGCAGGATGAAGTTCGAATCTCTAAAATCTG AGACAAAGTTCACTGATAACCGTATCATAGTGAAATGCACTGGGAGTTACACAATCCAGACTGTGACAATGAATGTTCATGATGCCAGGAAGTCAAAATC GGTGAAGGTTTTAAACCTATATTATAATAATCGGCCAGTTGTTGACTTGTCAGAGTTGAAAAATAACTGGTCTTTGTGGAAGCGTGCAAAAAGTTGTCAT CTTGCTTTCAATCAGACTGAACTTAAAGTTGAATTTCCCATTCCCATTACTGCTTGCAACTTCATGATTGAACTAGATTCGTTCTATGAAAATCTTCAGG CATTGTCTCTAGAACCACTGCAATGCCCTCGTTGTAGTCGTCCTGTCACTGACAAGCATGGTATATGTAGCAATTGTCGTGAAAATGCATATCAGTGCAG GCAATGCCGCAACATTAATTATGAGAATTTAGATTCTTTTCTATGTAATGAATGTGGGTTCAGCAAATATGGGCGGTTTGAGTTTAATTTCATGGCAAAA CCAAGTTTTACATTTGATAATATGGAGAATGATGAAGATATGAAGAGGGGACTGGCAGCCATTGAATCGGAGTCAGAGAATGCTCATAGGCGATATCAAC AACTTTTGAGCTTCAAAAAGCCCTTACTTAAAATTGTATCAAGCATTGGTGAGAATGAAATGGATTCACAACAAAAGGACTCGGTGCAGCAAATGATGGT TTCTTTACCTGGCCCTTCTTGTAAAATCAACCGCAAAATTGCCCTTCTTGGAGTCCTCTATGGTGAGAAGTGCAAAGCAGCTTTTGATTCTGTCAGCAAA AGTGTACAGACACTGCAAGGGCTGCGTAAGGTGTTGATGAATTATTTGCACATAAAGCATTCCGATAATAGTGTGGCTTCAAGATTTGTTGTTTCCAGGT CACCAAATAATTGCTATGGCTGTGCAACCATGTTTGTAACGCAATGTCTAGAACTATTACATGTGCTAGCTAGGCATCCAAATTCCAAAAAACAACTTGT TTCAGCTGGAATTTTGTCTGAATTATTTGAGAATAACATTCATCAAGGTCCTAAAGCTTCCCGTTTCCAAGCAAGGGCAGTCCTTTGTTCTTTATCTGAG GGTGATGTAAATGCGGTTACTAAATTGAACAGTCTTCTACAAAAGAAAGTCATGTACTGCCTTGAGCATCATCGCTCCATGGACATTGCTGTGACTACAC GTGAGGAGATGTTATTACTTTCTGAGGTGTGTTCTTTGGCTGATGAATTCTGGGAGTCAAGGCTACGCATTGTATTTCAGTTGTTGTTTTCTTCTATTAA GTTGGGTGCAAAGCATCCTGCTATATCTGAGTATGTCATTCTTCCATGCCTTAGAATTGTATCTCAGGCATGTACACCTCCAAAACCTGATACACCAGAG AAAGAGGATGGCCTTGGTAAGCCTTCTGTACAGACAAAGGATGAAAGCGATTCGAATGTATCTGGGTCTATAACTAGTGCTGTTGTTGGGACCAAGTCAT TCTGTGATCCATCAGAAAGAAATTGGGATGCCACTCCGAAGACTCGGGATATTCAGTTACTTAGCTATTCAGAATGGGAGAGGGGAGCTTCCTATCTGGA TTTTGTTAGGAGGCAATACAAAGTTTCTCAGGCTGTCAAAGGTGCTGGGCAGAGGTTACGAAGCCAAAGACATGACTACCTGGCACTTAAATATGCTCTG AGGTGGAAGCGCCGTGCCTGTAAAACAGCTAAAAGTGACTTATCATCAGTGTTTGAGTTGGGATCATGGGTTAAAGAACTTATTCTCAGTGCTTGTTCTC AATCCATTAAATCAGAGATGTGCATGCTTATAAGCTTGCTTTGTGCCCAAAGTTTATCCAGGAAATTCCGGTTGCTGAACCTATTGGTGTCTTTGTTACC TGCAACACTTTCTGTGGGTGAAAGTGCTGCAGAATATTTTGAGTTATTATTCAAGATGACTGATTCAGAGGATGCTCGTCTATTTCTGACTGTTCGAGGC TGTTTACAGACAATTTGTACTCTAATTACCCAAGAAGTAAGCAAGGTTGAGTCTCTGGAAAGGAGTCTGCACATTGATATATCTCAGGGATTTATCCTTC ACAAGCTCATAGAGCTTCTTAGTAAATTTCTAGAGGTTCCAAATGTCAGATCCAGATTCATGCGAGATTGCTTGCTTTCTGAAGTTCTTGAAGCGCTTAT TGTAATCCGTGGCTTGATAGTTCAAAAGACAAAGTTGATAAGTGATTGCAGTCGGCTTCTAAAAGATCTTTTAGATAGTCTACTGCTAGAAAACAGTGAA AATAACCGGCAGTTCATCAAGGCCTGTATCAATGGTTTGCAAATACATGGGGAGGAGAGGAAGGGGCGTGCTTGTTTGTTTATCTTAGAGCAGCTATGCA ATCTTATCTGCCCGTCAAAGTCCGAACCTGCATATTTCTTGGTCCTCAACAAGGCTCATACCCAGGAAGAGTTTATTAGGGGATCAATGACTAAAAATCC TTATTCAAGTGCTGAAATTGGTCCATTGATGCGCGATGTTAAGAATAAGATTTGCCATCAGTTGGATTTGTTAGGTCTTGTTGAGGATGACTATGGAATG GAGTTGCTAGTAGCTGGCAATATCATCTCTCTTGATTTGAGCATTGCACAAGTTTATGAGCTAGTCTGGAAGAAATCAAAAACATCTTCAAACAATATGA CTAATTCCTACTTGTTGTCTCCAAATACTGTTGCCTCATCCAGAGATTTCCCACCTATGACAGTTACATACCGCCTCCAGGGATTGGATGGTGAAGCAAC TGAGCCTATGATTAAGGAGTTGGAGGAAGATAGAGAAGAATCTCAGGATCCAGAGGTTGAATTTGCTATAGCAGGTGCTGTTCGTGAATGCGGTGGATTA GAGATACTATTGGGCATGATTCAGCGTCTGCGAGATAATTTCAAGTCCAACCAGGAGCAATCGGTTGCAGTTCTTAATCTTCTTATGTACTGTTGCAAAA TTAGAGAAAATAGACAGGCTTTGTTGAGGCTAGGAGCTTTAGGCTTACTTCTTGAGACAGCAAGAAGGGCTTTCTCAGTTGATGCCATGGAGCCAGCTGA AGGCATTCTTTTGATTGTTGAAACTCTGACATTAGAAGCAAATGAAAGTGACAATATAAGCATCACTCAAAGTGCCCTTACTGTCACTAGTGAAGAAGCT GGGACAGGTGAACAAGACAAGAAGATAGTTCTCATGTTCTTGGAGAGACTGTCTCATCCATTGAGCCTTAAGAAATCAAACAAACAGCAGAGGAACACTG AGATGGTTGCTCGAATATTGCCCTATTTGACTTATGGTGAACCTGCTGCCATGGATGCTCTAGTCCAACATTTTAGCCCTTACCTGCAAGACTGGGGAGC ATTTGATCTTTTGCAGAAACAGCACCTGGACAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_196428; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_494009
| Blastp | Auxin transport protein BIG from Arabidopsis with 80.82% of identity |
|---|---|
| Blastx | Auxin transport protein BIG from Arabidopsis with 79.12% of identity |
| Eggnog | Ubiquitin protein ligase E3 component n-recognin 4(ENOG410XPP8) |
| Kegg | Link to kegg annotations (AT3G02260) |
| CantataDB | Link to cantataDB annotations (CNT0002836) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019452981.1) |
| Pfam | E3 ubiquitin-protein ligase UBR4 (PF13764.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |