Ll_transcript_493333

• Id Trinity: TRINITY_DN52880_c0_g3_i2
• Name Transcript: Ll_transcript_493333
• Sequence: CAGAGGATATTCCTGGATTACCTCCGATAAGGGAGATAGAGTTTGCTATCGATCTAGTTCCTGGAACTGGACCGATCTCTATTGCTCCTTATAGGATGGC GCCATTGGAGCTGGCGGAACTGAAGAAACAGTTGGAAGGTTTGTTGGAGAAGCAATTCGTCAGACCAAGTGTTTCGCCTTGGGGTGCGCCAGTTTTGTTT GTGAAGAAGAAAGATGGCAGTACGCGTTTGTGCACGGACTATAGACAGCTCAACAAAGTGACCATCAAGAACAAGTACCCGTTGCCTAGGATTGACGATT TGATGGATCAACTAAGAGGAGCGACGGTGTTTTCAAAGATCGATCTTCGATCAGGGTACCATCAGATACGTGTAAAGGCGGAGGATATTCCGAAGACTGC TTTTCGGACGCGTTACGGACATTACGAATATCTCGTGATGCCCTTTGGTGTAACTAACGCGCCCGCAATATTCATGGATTACATGAACAGAATATTTCAT CCGTACCTCGACACGTTTGTCGTTGTATTTATCGATGATATTCTGATTTATTCGAAGAATAAAGAAGAACATGCCGAGCATCTGCGTGTGGTGTTGCAGA TTTTGAAGGATAATCAGCTCTATGCTAAACTTTCGAAATGTGAGTTTTGGCTAGAGTCAGTTAATTTTCTCGGTCATGTGATCTCAAAAGGAGGAATTGC AGTGGATCCGGCAAAGGTAGAGACGGTAATGGACTGGAATTCTCCGAAGTCCGTGACGGAGATTAGAAGCTTTTTGGGATTAGCGGGCTACTATCGCAAA TTTATTGAAGGATTCTCTAAGTTAGCATTGCCTTTGAAAATGTTGACAAGGAAAGACAAGGCGTTTGTATGGACAGCTAAGTGCGAAGAAAACTTTCAGG AGTTAAAGAAAAGATTGACGACCGCACCAGTGTTGATTCTGCCAGATCCTAGTGTGAACTATAATGTGTACTGTGATGCATCTAAGCAGGGTTTGGGATG TGTGTTGATGCAGCAAGGAAAGGTGGTAGCTTATGCATCCAGACAGCTAAAGACTCATGAGCAGAACTACCCGACGCACGATCTGGAGTTAGCGGCGATC GTGTATGCACTCAAAGTATGGAGACATCATCTGTATGGTGTAAGATTTGAAGTGTTCAGCGATCATAAAAGTTTGAAATATCTGTTTGATCAGAAAGAAC TGAACATGAGGCAAAGACGATGGATGGAATTCTTGAAGGATTATGACTTTGACTTGCAGTACCACCCGGGAAAGGCTAATGTGGTGGCTGATGCCTTGAG CAGGAAGTCGTTACATCTCGCAACATTGATGATCAGTGAGCTGAGGCTGATAGAAGAGTTCAGGGATATGAATCTAGCAGTACAAGTTGGACCCAAGAGC TTGATTTGTGGAATGCTCACCGTAAGGAGTGATTTCATGAATCAGTTGAAAGGGTTACAAGATGTTGACCCAGAGCTTCAGGAGAAGAGAAAATTTTTAG AGGAAGGAAAAGCCCCAGAATTTCAGATTGGAAATGGTGGTGTACTCAAGTGTAAGGATAGAGTCTGTGTGCCAAAAGATTCTGATTTGAGGAAATCAAT TTTGGATGAAGCACACAAGAGCAAGTTAAGCATTCATCCCGGTGCTACCAAAATGTACCAAGATTTAAAGAAAATGTTTTGGTGGTCGGGTATGAAGAAG GATGTAGCAGAGTATGTCTCTCGGTGCCTGGTGTGTCAGAAAGCCAAGATTGAGCACCAGCGACCAGGGGGAGAACTCCAACCATTGGATATTCCGGTTT GGAAATGGGATAGCATCTCGATGGACTTCGTGAGTGGATTTCCAAAGACTCAGAAAGGCTTTGATGCCGTTTGGGTTATAGTGGATCGTCTGTCGAAGGT AGCTCATTTTCTACCCATTAATATGAAGTACTCTTTGGAGAGATTGGCAGAGATTTATATCAAAGAGATTGTCAGACTGCACGGTATTCCCGTAAGCATC ATCTCGGATAGGGATCCGCGTTTCACTTCTAAAATCTGGAATGGTTTGCAAGCGGCTCTAGGAACTAAGTTGAAGATGAGTTCTGCTTATCATCCGCAGA CTGATGGTCAATCAGAAAGAACGATTCAATCGTTAGAAGATCTCTTAAGAGCATGTGTGCTGGATAATGCAGGAAATTGGGCTGATTTTCTGCATCTGAT TGAGTTCACCTATAACAACAGTTTTCATTCTAGCATCGGTATGGCACCGTATGAAGCTTTGTATGGCCGGAAGTGCAGAACCCCGTTGTGTTGGTTTGAA ACGGGAGAGAATTTAATGTTGGGACCCGATGTGGTCCAGCAGACGACGGAAAAGATTCGATCGATCAGGGAGCACATGAAGACGGCTCAGAGTAGGCAAA AGAGTTATTACGACAAGCGGAGGAACCCTCTCAGTTTTGAAGAAGGTGATCATGTATTCATGAGGGTGGTTCCGACGACTGGTATTGGCAGGTTACTTAA GGCCCGAAAACTTACCCCAAAATTCATTGGACCTTATCAAATCCTTAGGAAAGTTTGACCAGTAGCTTACCAAATAGCCTTACCGCCTTTGTTGTCCAAT CTGCACAATGTTTTCCATGTGTCTCAACTTAGAAAGTATATTAGTGACCCGTCCCACATCATCGAACCCGATTCAGTTTAGCTAAAGGATAATCTTACGT TTGAGACGTTGCCCATAAGGATTGGTGATCGGAGTGTCAAGATCCTCCGAGGAAAAGAAATCGCGCTGGTAAAGGTTATATGGAGCCAATCCAATGGCGA AGATGCGACTTGGGAGGTCGAAGATGCGATGAAAGAATCCTATCCCCATCTTTTCGAGTGAGAGGTATGCTCTATTTTCGAGGACAAAAATCTTTTAAGA GGGGGAGGATTGTAACACCGCGAATTTTATAAATTTTGAATTAAGAAATTTTATTATTATTTTTAATAAAAGTATTTTCGAAAATGAATTTTTGGGAATT TTCGGTAAAGAATTAGACTAAACTCTAGCCGAGTTTTAGTCTCATTATTTCTAAATTTATAGTAAAATTTCATGATTTTCGGAGACAATTGGTTTTGGAC CACTGTCGGGGCCGAATGTTTTCTATTACGGCTCAAAAAGGTGATTCTGAGTTCCATAACTCAGAGTTGAATTCTGATCACGCTGTTGGCTTCGTAATCA CATTTCGAGTCAAAATAGACCATAAGTTCATTCATAACTATTTTCAAAAATACTTTCACTCGGAATGCCGAAATTCGAAGTTCCAACCATAAAATAAAAT CGGGTGATCTTTAATTTCTAA
• Tissue: pods
• Gene name: LI_gene_196526;
• Additional information: details;

Expression of Ll_transcript_493333

FPKM

• PAB: 0.1
• PNAB: 0.9
• PS1: 0.5
• PS2: 0.2
• PS3: 0.2
• PW1: 0.4
• PW2: 0.6
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_493333

• Blastp: Transposon Tf2-9 polyprotein from Schizosaccharomyces with 33.99% of identity
• Blastx: Transposon Tf2-9 polyprotein from Schizosaccharomyces with 34.08% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (SPAC167.08)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_012575125.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078.26)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;