Ll_transcript_493266

• Id Trinity: TRINITY_DN52881_c2_g1_i4
• Name Transcript: Ll_transcript_493266
• Sequence: ATACAAAGTACTACTTTTCAACCTATATTAATTTTCCTCTATATTGAACTGAGATCATGTTCTATCCAAGATTATCCATGAACTCCTTTACTCTCTGACT TTTCCTACAACTACAAGATCAAGAAGGCTGCCATTAGTGCATAATGAAGACATCAGTTTGCATATTTCTCTGCCTAACATTGGTATCAAGAGCCAGAAAA GAAAAAAAAACTGTGTATTGTGTAGAAACAATAGCAACTCTTCAAATTGTTTTTCTACAACACAATTGCAATGGCTACTGATAACTTTGTGCAACCAGCA ATTCCACGTTTTGATGGTCACTATGAACACTGGAGTATGTTGATGGAAAATCTTTTAAGGTCCAAGGAGTACTGGCAAGTGGTTGAAGATGGTGTTGCAA CACCAGAAGAAGGCAGAGAACTTAATGCTGCACAGAACAGAGAGCATGATGCAATGAAGTTGAAAGATTTGAGAGCAAAAAATTTCTTATTTGAAGTCAT TGATCGCTCTATCCTGGAAACCATTCTTTGCAAAGAAACTTCCAAGGATATTTGGGATTCAATGAAAAAGAAATACCAAGGCTCATCTAGAGTCAAACGT GCTCAACTTCAAGCTTCGAGAAGGGACTTTGAAACTTTGCAAATGAAGGAAAGTGAGTCAGTCACTGATTATTGTTCAAGGGTCATGGGAATTGCAAACA GCATGAGAATTCATGGAGAAAAGATGGGAGACACTCTTATTGTTGAAAAAATTCTAAGCTCGCTCACACCAAAATTTGACTATGTGGTGTGTTCAATTGA AGAATCTAATGACACTGATGAACTCCCTCTTGATGAACTTCAGAGTTCCTTGTTGGTTCATGAACAAAAGATGCATAGAAGTTCAAGAGTGGAGGAACAA GCATTGAAGGCTTCTACCAATACTCATTCCAATAACTTCAGAGGAAGGGGTAGAGGTAGAGGTAGAGGTAGAAGATATGGAGGTCGCGGAAATAGAGATT CCAGCAGGAACTTTAAAGACAATCCTCACCAACAACAAGGAAGAGGTAGAATTTATGAAAAACCCAAGGTAGAGTGTTTCAGATGTCATAAGTTTGGTCA CTATGCATATGAGTGTTACACAAAATTGACTAACTACAAAGGGAAAGGAGAACAATCTAACTTTGTAGAGGAGAAGGAAGAAGAAACATTGCTAATGACA TCTCATGAGAAATTCCAATCTGATGTATGGTATATTGATATTGGTTGTAGCAACCACATGTGTGGAAGTAAATCTTCTTTCACTTATTTAGATGAAAACT TTCATTCTAAAGTAAGTTTTGGTGATTGTTCTACTGTAAATGTGATGGGAAAGGAGACATTAAAATTAAAACTAAGAATGGTTTGGTGGAAACCATCTCT AATGTATTTTATGTTCCTGACTTGAAAAGCAATTTGTTGAGTGCTGGTCAATTGCAGGAAAAAGGTTATATAATAACCATACAGAAAGATGCTTGTGAAA TATATGATCCTATCAGGGGAGCCATTGCAGTGGTTGAAATGAGTTCTAACAGGTTGTTTCCTTTGAAGATTCAAAGTGCACAAACCTGTTTGGTGAGTGA AGTGAAGGATCCCTCATGGCTTTGGCATTTTCGCTATGGTCACTTGAATTTCAATGGATTGAAGACACTTCATCAAAAAAATATGGTGGTAATTAATCCA TCTCAAATTTGTGAAGAATGTGTTGTTGGCAAACAACATCGTTCATCATTCCCACAAGGAAAATCATGGAGAGCAAAACAAGTTTTGGAGTTGATTCATT CTGATATTTGTGGACCTATTAATCCTACCTCAAATGGTGGTAAATGGTACTTTATTACATTTATTGATGATTATAGTTGAAAAACATGGGTTTATTTTCT ACAGGAAAAATCTGAGGCTCTATCAGTTTTCCAACAATATAAAGCACTTGTTGAAAAAGGAAGTGGATATGCAATCAAAGTTCTTCGCAGTGATCGTGGT GGTGAATACAATTCACAAGAATTTGTAAATTTTTGTGACATACATGGAATCAAGAGGCAACTTACAGCAGCTTACACACCACAACAGAATGGCATTGCAG AAAGGAAGAATCGAACAATCTTGAATATGGTTCGAACAATCTTGCAGATGAGTGGAGTGCCAAGGAATTTTTGGCCAGAAGCTGTAAATTGGAGCATTCA TTTGCTGGACAGAAGCCCCACCTTTGCTGTAAAGAACATGACACCTGAAGAAGCTTGGAAGGGACATAAGCCAAGTGTTGAGCATTTCAGAATTTTTGGT TGCATAGCTTATGCTCATGTTCCATATCAGAAAAGGAAGAAACTTGATGATAAGGGTGAAAAATGTGTATTCCTTGGTGTTAGTGAAGCCTCCAAAGCAT ATAAATTGTACAATCCTCTCACAAAAAGGATTGTAACAAGCAGAGATGTTATTTTTGATGAAGAAAGAACTTGGGAGTGGAATGGGCAGCAACCTAATCC AAATACTTCAGAATTTGGATTTGAAGAAGAGGAACAAGAGAATGGAGGAGAAGAAAAAATTGCAACACCAACAAGAGAAGAAACTTCAACAGATGCACAT GTTGAACCTCATAGAAGTCGCATTCGAAAAAGGCCAGCTTGGATGGAAGATTTTGAGGTAACTGGAATTAATCAAATTGATGATCATGTTACTCATTTTG CATTATTTTCAGATTATGATCCCACAACCTTTGAAAGTGTCGCGAAAGAGGAAAAATGGCAAAAGGCAATGGATGGAGAAATTGAAGCCATAGAAAGAAA TCATACATGAGAACTTGTTGATCTTCCAAATGGGCAGAAAACCGTTGGTGTAAAATGGCTTTTCAAAACTAAACGAAAAGAAGATGGTGAAGTTGACAAG TATAAGGCAAGATTGGTGGCAAAAGGATATAAACAAGAATATGGTGTGGACTATAAAGAGGTGTATGCTCCGGTTGCAAGACATGATACCATCAGATTGG TGGTTGCCATGGCAGCTCAAAACTCATGGCCTATCTATCAGATGGATGTTAAATCAGCATTCCTTCATGGAACCTTGGATGAGCAGGTATTTGTTGATCA ACCCCCTAGTTATATTAAAGTTGGGAATGAACATAAAGTGTATAAATTAAAGAAAGCACTTTATGGATTAAAACAAGCTCCAAGAGCTTGGTATAGTCGA ATAGAGGCATATTTTTTGAAAGAAGGATTTAAGAAATGCCCATATGAGCACACTCTCTTTGTTAAGGTTGGATCTGAAGGGAAAATACTTATTGTTTGCT TATATGTTGATGACCTTATATTTACTGGAAATGATGTGTGGATGTTTAAAAAGTTCAAAAAGTCTATGATGATTGAATTTGAAATGACTGATCTTGGCTT GATGCATTATTTTCTTGGTATAGAAGTAGTGCAATCAACTAATGGATACTTTATTTCTCAAAAGAAGTATGCCCAAGAACTCTTAAACAGGTTTCAAATG CAGGATTGCAATCCTGTAAGTACTCCATGTGAGTATGGCTTGAAGCTAAACAAAGACTCTGAAGGGAAGAAGGTGGATAACACATTATTTAAGCAAATTG TGGGTAGTTTGATGTACTTAACTGCTACTAGGCCTGACATAATGCATTATGTCAGCCTAATTAGTAGATACATGGAAAGTCCAACTGAAATGCATCTTTT AGTTGCAAAAAGGATACTTCGTTATATTCAAGGAACTAAACAGCTTGGACTATTTTTCAAGAAGGGTGAAAAATCAGAATTGATTGGGTTCACTGATAGT AATTTTGCAGGAGATCAAGATGATAGGAGAAGTACTTCAGGACATGTCTTTATGCTTGGAACATGTGTTGTCTCATGGTTATCTAAAAACCAACCAATAG TCACTTTATCAACAACTGAAGCTGAGTTTGTTGCTGCTTCAAATTGTGCTTGTCAAACCATTTGGTTGAGGAAGATCCTTGAAGAACTACATTTCAAGAA AGATGATGCTACTATTATATATTGTGATAATACATCAGCCATCAAACTCTCCAAAAATCCTGTACTTCATGGAAGAAGTAAACATATTGATGTTAAGTAC TATTTTTTGAGAGACCTCAACAATGATGGAACAATTGTCTTGAAGTATTGCAGAAGTGAAGATCAATTGGCAGACATTTTTACCAAACCTCCCGAGGCAC CTTCATTCCAAAATTTGAGAGATTTGTTGGGTGTTTGTATGATGCAGCAGCAGAGTTAGTAAACTGAAAATAAAATTTTCAGTTCAAGGGAGGGAATCTC AGTTATTTTATTAGTTTTATTTTCTGTGTTGTGTTGATGGGTGTGTGAGTAGTTTAGCAAG
• Tissue: pods
• Gene name: LI_gene_196530;
• Additional information: details;

Expression of Ll_transcript_493266

FPKM

• PAB: 0.2
• PNAB: 1.6
• PS1: 1.8
• PS2: 1.2
• PS3: 1.9
• PW1: 1.2
• PW2: 1.9
• PW3: 1.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_493266

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 21.99% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 36.98% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020987654.1)
• Pfam: gag-polypeptide of LTR copia-type (PF14223.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;