Ll_transcript_492657

• Id Trinity: TRINITY_DN52887_c2_g1_i5
• Name Transcript: Ll_transcript_492657
• Sequence: CAATAGGTTAATAGAGTGGCCCAATACTGTTAAGAAAACAACACCAACATTGAGTTTATTTATTTAGGTTCACTTCGTTTCGTTTCTTCACTAATTCCTC TGTTTCTTCAAACGCCAACCTTCAATGGCGACACTATCTCATGCTCAAGCTGTCAAGTCTCTCAACAAATCACCTGGTCGACGTCGTTTTGTTTTTAAGT CATTCAATGATAGAGTGAATGATATTGATATTAACGTGTATCGAAGTCTTGATAAGCTTAAACCTGCACCCTCAGATGGTTCCTTTTTCAGAGATTGCCT TATGGAATGGAGGGAACTGAACACTGCAGAAGATTTCATATCCTTGTATGAAGAAATTATGCCTTACACACAAACATTGCCTTTGGTGCTTTTGCATAAG GAATCTTTAATCACAAAACTTCTTTCTAGGTTACATATGAAAGCAAGGTTATCAGTTGATGCAATTCTCAGGTTGATTGCAGCATTATCTAGAGATCTCC TGGACGAATTTGTTCCGCTTTTTCCAAGAATTGTTGATTCTTTAGTATCTCTTTTAGAAAGTGGTGGTGATAGGGAGCCGGATATCATTGAGCAGATTTT CACTTCGTGGTCATGTGTAATGATGTATCTGCAGAAATATTTAATAGACGACCCATCAGTGGTGCTCAAGGTCACTGAAAAATTGAGATATTATCCAAAG AAGTATGTCCAGCAATTCATGGCAGAGGCAATGTCATATGTTCTGAGAAATGTCCCCAAGGATGAGCAGCTTGAAAGAGGAATTGGAATTGTCATGGATG AAGCAGTGAAGGATCCATCTTCCTGCATAGAATCAGTTGCCGAATTGCTTTATAACATTATGAAAGGTTACTCGTCGAGGTTCCATTCAAAATCAAAGCG TGTGTTAAAATTATTGACAAGTGAAGCATTCTATGGGAATGGTGATATAGCTAACCAAGATTCATGCACCATTTTGAAAGTTGTAAAATCTGTGTTTAAG AAATTATGCCAGGCAATGGAACCCAAAGAGTTGAATTTGGTATGGGATTGCTTATATGAGGAAGTGAGTAAAGGTGTTAGTACTAAAAACTTGCAGCATT TAAGATGCATTTTATCAGTGCTTGTCTCTGCTGTGAAGGTGCAAAATGGGCAAAAGGTGTCTGATTATGAGCCTTTGCTTGAACTTGTAAGGGAGATTGT GCAGACATTTATCACACCTGGTGGTATTGAGTCTCAAAAAGATTCACATTTAGTTATCGATAAAATTTTGAAATTAATGTTGGCCATTCTCAATGGGCTT TATAGTTGCAGTAAGCTTATGATATCACATTGTGCTCTCCAGTGGGCTCCAATTTTCAAATTACGGAGTCCAAGTTTGGCGCGTTTCATTAGAGAATTGC TAGAGAAGGAATTTTGTTTACTCCCTTTCAGGAGCAATGTTATAAGTGCAATAAATGATTTATTGGAGATCACAGAGGAAGAAGCCATACATTTGTTACA ATTATTCTTTGAGAAAATACAAAACTCAGACTGTGTGGATGGAACAAGTGCAGAACCACTTGCTAGTATACACAATCGTTTGAAAGGGACTATTCTCCAA ATAAAAAATGATATTGAACGTTCTGATGTGTCGTGTCAAATCGATGAAGGAAAGTTGGCAGTACTATGGGGAGCTGTGAGCTGCTATTCTTATAGGTCTA TTGTTGAGTCCGATTCATCCTTGTTGGTGGATCTTATGCATACTGTAGACAAGCATCTGATAGATAATGCTGACGACATTGCAGACACATCTAAAAAAAC TTGGGAAAGCATTATAGGTGCTGCACTAAGCTCTTATAACCGACTTTACAGGGATGATAAGTGTAAAGATGATGAAACTGGAACATTTCTAAGTCTTGGA AAACGCTATAAATCATCTCCCCAAGTGTTGTTAGCCATTGCTGATTATTTGGAACTCAAATATGGTTCCTGTTTAGAAGACACTGGGTGCTGTAGAATGT ATCATCCAGAACTAGAAGAAAGGGTTGCAGACACAATGGCAACTTTTGCTGATAATTTGCACCATTTGGACAAGGAGATCCGCATTTCAACTCTTAAAAT ACTTTGTCACTTCAAACTTTTGGATGGGGACAATTCTTCACTGGATCAACCATCTAAGAAGAAAAGGAAAACTGAAATATCTTCAGCTTCCAATGTGGAT TCCACAGGAAACAATGTTCTGCTGCTCCTCCTCTCTATTGAAACAACCCCTATTTCAATTTCTGTAGACATAAGCATTAAGCGGTTGATTTCCAAGATAC AGACGGATCTAACTTCTGGGAGGATTCCTTCTGTTTATGTGACTCTTGTTTTGAATGGATTGTTTGGCATATTGAACAATCGATTTAGCCTCCTCTGGGA CCCTGTATTAGAATGTATTGCTGTCTTGATTAGGCTACATTTTTCACATGTTTGGAATAAATTTATTGTTTATCTGGGAAGGTGTCAATCAATATTGCAA ACATCTTGTGAGTTGCATGATAGTGTCAATGGTCCACCGCTTCATCAGCCAACTGGTCTGCATGATTGTTTCAAATCATTTGTCAGTCATGCATCAGATA GCACACCATCTGTAACAGTGTTGACATTACTGTTGAAAGCTCTACAAAAAGTTCCAACTCTTATTGAACCTCACTCGCAGCAGTTTATTACTTTATTTTT GAAGTTTTTAGGATACGACACTGATGAACATGAAAGAAATTGCAGTGTGGGATTATTTGATTCTCAAACTTGTAAAGGCAAGGAGTGGAAGCTTGTCTTG AAAGAATGGTTAAACTTGTTGAAGCTGATGAAGAATCCCAACTCATTTTTCCGTAGCCAATTTCTCAAGGAGGTTCTACAGAATAGGCTTCTAGAGGAAA ATGATCCTGAAATACAGATGAGAGTTCTGGATTGTCTGTTAATCTGGAAAGATGATTACCTTATACCATATAATGAGCATCTGAGAAATTTGATCAGTTC CAAAAATTTAAGGGAGGAACTAACCACATGGAGTTTATCCAGGGAATCTAACATCATTGAAGAATGTCACCGGGCTTATGTTGTGCCATTAGTTATCCGT CTGTTCATGCCGAAAGTACGAAAGCCGAAAGGACTTGCATCACGAAAGAAAGCAAGCATTTGTCATCGGAGAGCTATTCTGAGTTTCATAGTTGAACTTG ATGTCAATGAGTTGCCACTTTTCTTTGCATTACTGATAAAGCCATTGCAAATAGTGAAAGAAACTGATGGAACTACTAATTTGTTTTGGGCCCTACCTAG AGGTTCCATTAGTGAATTTCAAGCATCATCTTTGTTAGAATGTTTTACTTTGGACAACATAGAAACCCTATCCTGGAAAAAGAAATATGGTTTTTTGCAT GTTGTTGAAGAAATTGTTGGAGTTTTTGATGAACAGCACATTAGGCCTTTTCTTGATCTATTGGTGGGTTGTGTTGTTCGTATGTTGGAAAGTTGCAGTT CGAGTCTTGACAATACACAATTGAATGCCACAGATCAAAGCAACAACTCTAACACAAGCTCAAGTTCCCTGAATGGCAATTTGAAGCAGCTCAAGGATAT GAGATCTCTGTGCCTTAAAATTGTTTCTCTTGTTCTCAATAAGTATGAAGATCATGAATTTGATGCTGATTTGTGGGACAGATTCTTTTCCGCAGCGAAA GCACTGATTGATAAATTCAAACAGGAGGCTGCTAGTAGTGAGAAGCCAAGTTCACTATTATCTTGTTTTGTGGCCATGAGTGCAAACCAGAAACTTGCAG CTCTGTTGTGCAGGGAAGAGAGTCTTGTACCTGATATAATTTCAATAATCTCTGTGAAGTCAGCTTCTGAAGCTGTTATATTTTTTGTTCTAAAGTTCAT TGAGAACTTGCTAGACGTTGACAACCAGTTGGATAATGAAGACAGCCCTGTTCAGAGAGTTTTACATTCTAACATTAAATCACTCATGGCTAGCATGTGT TGTTTATTTGGAAGTGATAGTGCAGCTAAGAGAAAGCTGATCAAGTCTCCAGGGAAGACACTGATAAGAATTTTCAAATTCCTTCCCAACTACGTCAAGG AGGCAGAGCTGGCAAATCACTTCGTGGACATATTGCTTCTGTTTTTTGATAAGAAAACCCCAAATTCTGATGTATGTATTGAAGCTTTGCAAGTCATTCA AAATATCATACCAATATTAGGACATGGAAGTACCACAAAAATTCTAAGTGCTGTTTCTCCTTTATATATTTCGTCTGAGGCGGACATGCGGTTAAGGATA TGTGATCTCCTTGATGCTCTTGTAGCAACTGATGCATCAGTATTCGGAGTGGCAAAACTTCTCCGTCAGCTGAATGCAACAACTTCTTTGGGTTGGCTTG ATCATGATACTATTTTGAATGCTTACAGCAGCATTAATACTGATTTCTTCAGAACTGTTCAAGTTGAACATGCATTACTTCTTTTATCTCACTGCGTCCG TGACATGTCATCAGAAGAAACAACTTTTATGCGTAGTGCCTATAGTTCATTGCTATCTTTTGTTGAATTTTCTGCCGTCATCCTTTGCCAAGATGGAAAT AGTGAACAAGAGTTGTCTATCATAAAAAATACTGATGATTGTTGGACAAAATCATGCATCCAGCGTATAGCAAAGAAGTTTCTCTTGAAGCACTTGGCTG ATGCAATGGATGGATCACTTTCTGTTATAAAGGGATGGACAAGATTGTTACATCAAATGGTATTGAAGCTTCCAGGAGTGTCAAACCTTAAGTCCCTCAC AGTCCTGTGCAATGAGGACAGTGAAGTAAATTTTTTTGACAACATAGCTGACTCAGTGATTCGAAAGAGAGTGAAGGCATTGGCATTGTTTAGGAACATT ATCAGCACAAACAAGTTATCAGAGTTCATCACTGAGAAAGTCTTCATGCGCCTTTACTTCAACATGTTGTTTGATGAGAAAGAAGCAAAGGTAGAACATT TGAAAAATGCATGTGTAGAAACTATTGCTTCTGTAGCAGGTCAGATGGGATGGAAGTCATACTACGGATTATTGATCAGATGTTTCAAGGGAATGTCCAC TGCTCCAGACAAGCAGAAAGTGTTTATCCGCCTGATTTGCTCTATTTTGGACAAATTTCATTTCTCTGAACTTTCTTACACCGAAGGGCCTAAGCAAACT TTAGGCGGGGTTTCTGATATGGGGATTTCTGAGACCGCTTCAGCAATCTTACGCCGCTGTGATACTTTTGATGTGAACACAGAGATGCAGACTTGCCTAC AGAAAGTTGTGCTTCCGAAGATACAAAAGCTGCTTGATTCTGATTCAGAAAGGGTCAATGTGAATATCAGTCTTGCTGCATTGAAACTGCTTAAGTTACT TCCGGAAGCTGTAATGGACTTGTATCTTCCAGCTATTATTCTTCGCATTT
• Tissue: pods
• Gene name: LI_gene_196569;
• Additional information: details;

Expression of Ll_transcript_492657

FPKM

• PAB: 0.2
• PNAB: 5.8
• PS1: 6.9
• PS2: 4.9
• PS3: 6.1
• PW1: 3.6
• PW2: 3.6
• PW3: 2.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_492657

• Blastp: Small subunit processome component 20 homolog from Homo with 20.59% of identity
• Blastx: Small subunit processome component 20 homolog from Homo with 20.02% of identity
• Eggnog: UTP20, small subunit (SSU) processome component, homolog (yeast)(ENOG410XSRE)
• Kegg: Link to kegg annotations (27340)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019438350.1)
• Pfam: Down-regulated in metastasis (PF07539.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;