Ll_transcript_494404

• Id Trinity: TRINITY_DN52894_c7_g1_i1
• Name Transcript: Ll_transcript_494404
• Sequence: GGCAGGCTGCCATGGAGGATGTACCGGATGAAAGGACCTGTCCAATTATCTGGGATCGCCACCTGTTCAACTGTCATGACTCTGGGCTGATAAATTGTTC CCTGGACCACTGATCTATTATTTCCAAGGCTCTTGGTGCTGGCGAGCTTGGAAAGGATGTCCGCCCGGGTGTTGTTCTCTCTTGGTACATGCTGAATGGT CGCCTCAACGAAATTGGCCATTAGTTCTTTTACTTTGATCAGGTATTTCCCGAGAAGGGGGTCTTTGACCTGGTATGTACCTGTAATCTGTGAAACGGCC AGCTGAGAGTCGCTACAAATCAAAATTTTCTGTGCACCCACCTCCTTTGCTAATTGCAGCCCGGCGATGCAGGCCTCATACTCTGCCTGGTTGTTGGAGG TTTGGAATGTGAACGTGAGGGAGTGTTCAATGGTGACCCCTTGACCGTCCTCTAACAGAACTCCAGCCCCACTTCCCTTTGGATTGGATGAACCGTCTAC ACAAATCGTCCACAACTGCTCAGAATGTACTGGGGCGGTCATCTCAGCCACAAAGTCAGACAGTACCTGGCTCTTGATGGCGGTTCTGGGCTCAAAACGG ATGTCGAACTGCGAAAGTTCGACGGACCAAGCTATCATTCGCCCTGCCAGCTCTGGCTTGTGCAAAATTTGCCTGATGGGTTGGTTAGTTCTGACAACCG TTGCATGGGACTGGAAATACTGGCGCAATCTCCTGGTGGTTACTAACAAGGCGTACGCCACCTTTTCAAGCTTCTGGTACCTCAGTTCGGGTCCCTGTAA GGCTTTGCTTATGAAGTACATAGGATTCTGTCCGTCCGCCGTTTCTTTTATCAGTACGGCGGCCACTGCCTCATCGGACACAGCTAGGTAGACAAACAAA ACCTCATCAGGTTCTGGCTTGGAGAGAATTGGGGGGGGGGCGGCCAAATACTGTTTAAAAGTCTGGAACGCCGCCTCACATTCAGCGGACCATTCGAACT TTTTGCTCTTCCTCAACAGCTGGAACAGAGGTAGGGACTGTTTGGCGGCGGAAGGTAGGAATCTGGATAGGGCCGCCAAGCGCCCATTCAGTTGTTGCAC TTCTTTAACTGTGTGGGGGCTCCTCATATTGATGATCGCCTGGCACTTCGCCGGATTTGCTTCAATCCCCCGACTAGTTAGCAGGAAGCCAAGGAACTTG CCGGCCTCCACCCCGAAGGTACACTTCTCCGGGTTGAGCCTCATGTTGTATTTGCGCAGCTGTTTGAAAATACTTTCCAGGATGGAGACATGATCTTCGC CGGGAAGGCTTTTGGCGATCATGTCATCCATGTAAACCTCCATATGATCCCCAATCTGTCCATCAAATACTTTGCTCATCATTCGCTGGTAAGTTGCCCC GGCATTTTTTAACCCAAAAGGCATGACTGTGTAGCAGTATGCGACTTGGTCCGTGATGAACGCCGTTTTTTCTTGGTCCGGCGGGTACATCGGAATTTGA TTGTAGCCAGAGTATGCGTCCATGAAGGAGAGGTATTGGTAACGTGAAGAATTATCCACCAAATGGTCAATATTAGGAAGAGGATATGGATCTTTAGGAC ATACCTTGTTGAGATCTGTGTAGTCTACACACATCCGCCACTTCCCGGAGGGTTTTTTTACCATTACCACGTTCGCAAGTCAGGTGGTGTATGTGATTTC TCTGAAAAAACCCGCCTCGAGCAACTCAGCAACCTTTGAGGCGACCTCTTTGATTCTGTCCGCCCCCATTTTCCTTCTTCGTTGTGCTACCGGCTTTGCA CCCGGATTTGTCGTCAGTTTGTGGCAGATGACCGAAGGATCTATGCCCGGCATATCGGCAGCTGACCAGGCAAATAGGTCGCGATTTTCTCTTAAGGAGG TTTCCAACTTCAACCTTTGTTCCGCTGGAAGAGTGCGGCCGAGGTAGACTACCTGTCCGGGGGAACGTCCCAATTGAAGTGTGATTTTTTCTCCTTCAGG TTGTGGCCGGAATTCTCCTTCATCTGCTCTGATGTCCAACTCGACCATATGTACGCCCCTAGAGTTTTTTGAGGGGGGTGTCTGTTGCTTGCTGAAATGG GGGCGGAGGCTCATCTGGTAGCAGCTTCGGGCGGAATATTGATCCCCTCGGACTGTGCAGACTTGGAGGCTGCTTGACAGGAATTTCATACACAGGTGAG GTGTGGACACGATGGCTTTCAATCTTTTTAAAGTTGGGCGCCCAACGATGGCGTTGTAGGCCGATTCGCAATGTACGACCAGGAACCTGGTCTGAATTGT TCTGCTCAGTGGGTGGTCGCCTATAGTCAGCCAGACCTCCACGTAGCCTCTAGGCGTGATGCCTTGTCTAGAGAAGCCTACTAACTGTCCGTCGTATGGT TGGAGATCTCGGTCCCGGAGTTCCATCTTTTGAAAGAGTTCCTGAAAAATGATATCCGCCGAGCTGCCCTGATCGACAAAGAGGCGACTAACCTTTTTGT TGTTCAACTTTGCTGTGATGACGAGAGGGTCATCATGCCCTCTGACGACGCCTTCATAATCACGGTCGTCAAAGGTGATGGGAGGAGACGTGTTGTGGTG TTCATGATGAGAGCTTCTGGCGGAAACATGCATCACCTCTCGGACGTACCTTTTCTGAGCGGACCTGGAGGTGCCCCATGCAGCAAATCCTCCTGAGATT GTGTTGATATCGACGGGACTTCTCTGCCTTTGATTGTCTTGGCGGCGCCTGTCGAGGTAGTCTCTGGCGACAGGACGCCGTTGATGAGCTGGGGGAGGTG ACCGTCGTCCTGTAGATTCAGGTCGACGACGTTGTGGTGATCGCCGGCGCTGTTCTAAACCTGCGATAAATCGCTGCAGGTGTCCTGCCTGAATAAGATC TTCGATGGTATCTCGAAGCTGAGTGCAATCGTTCGTCAGATGACCGAACATGCTGTGATATTCACAGTATTTGGATCTGTCCTGGGGGCCTGGCTTGGCT GGGCGTGGGCGAGGGAGTTGGACGAGGTGGGTTGTTAGGACCTCTTGCAGGATTCTTGAACGGCTGGCGTTCAAGGGTGTGTATGCGGAGTATTTGGATT TTTTGGGTTGGGGAGGTAGGTCACGTGGGTGGTCGTGTGGTCTTGGTCTTTTGGCTTCTCGAGAGGAGTGATGTGTCTGCGGTTCTGGATGGTTGTGGAT GTGGTGGGTTTCTTCGAGATTAATGAACTGTTGGGTTTTAGATCTGAGGTCTTCCATTGTGAGGTCGGTGTACTTGGCCAATTCCGTACGAAAAAGACCT TCCTGTAGTCCCATAACGAGGACGTGGACGACCACTTCTGGGCTTAGAGTGCACACTTTCATCGCCTCGGTATTAAATCGATCCAGATACGCCCTGATGG ATTCCTGAGGGACTTGGCGAATGCCGGACAGTGTGTAGGACGACCTGGGCTGTTCCTTGCTGGCTGTGAACCTTGTGTTGAAAGAAGAAGCCAGGGTCGC CCAGGTGCTGATGCTGTTCGGGGTCAGCCGTGTGAACCATTGCAGGGCTGCCTTTTTTAGAGTCAGTGGGAAAGCCCTACACATGATCGGATCAGTGGCC CCATGGAAAAGCATAGAGGCCTCAAAAGAATCTAGGTGGTCCTGCGGGTCTGTTGTTCCGTCATACTGGTCGATGTTGGTGGGGCGGGTGAAGTGCGAAG GTAATGGGCAAGCCATGATAGTGGAGGTGAAGGGGTGTCGGGCACCGCAATGATGGTGTGGGACATTTGGAGATTGGTTGGTGGGATAGGATGGGATGTA TGATTCTCCGGCTGACTCCTCACGGTGGATCTCTTGGATGGGGCGCTCGTGAGGGTTAGTGGTTTTCAGTTCTGGTTTTTGTAGTTGCTTAATGAGTTCA GCTTGTTCCTGGATTAGCCTTTCTTGGCGTTCCAGCATTTGGAGGAGTTGATGGGTGGTTGGGGGTGGTGGTTCTTGTTCGGTGTGGTGGCTTCTACTGG CTTGGTGTGATGGTTGTCTGGGTGGTGGAAGGGTACTAAGGGCAGGGTCCACTTGGCTGGGAGATAGAGCTCTGTTTCTTGTAGTCACCATGGTTGCGAG TAAGCCACAGACGGCGCCAATGTTCTTTCTCCTGAACACGAGGATATAGTAACCAATAGAACAGTGAAGGAATGACAGCAGTTGGAAGAGGAGACTTGAA GGAAGAGGAAGGTGAGAGGAAAAATGTTGAGCAGCTGGTTGAAGAAGAGAAGAACTGGACCCGCCGGTGGAGGTACCTGAAAAGGTTCTCCGACGATCAA GTCAGTATGTGAGCTTGAATATGTTTTATGATAGGAGAAGGAGAGTAGCAGGGA
• Tissue: pods
• Gene name: LI_gene_196673;
• Additional information: -

Expression of Ll_transcript_494404

FPKM

• PAB: 0.7
• PNAB: 0.6
• PS1: 1.7
• PS2: 0
• PS3: 0.3
• PW1: 0.9
• PW2: 1.3
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_494404

• Blastp: Retrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 33.81% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 32.82% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019420725.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078.26)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;