| Id Trinity | TRINITY_DN52894_c7_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_494406 |
| Sequence | GGCAGGCTGCCATGGAGGATGTACCGGATGAAAGGACCTGTCCAATTATCTGGGATCGCCACCTGTTCAACTGTCATGACTCTGGGCTGATAAATTGTTC CCTGGACCACTGATCTATTATTTCCAAGGCTCTTGGTGCTGGCGAGCTTGGAAAGGATGTCCGCCCGGGTGTTGTTCTCTCTTGGTACATGCTGAATGGT CGCCTCAACGAAATTGGCCATTAGTTCTTTTACTTTGATCAGGTATTTCCCGAGAAGGGGGTCTTTGACCTGGTATGTACCTGTAATCTGTGAAACGGCC AGCTGAGAGTCGCTACAAATCAAAATTTTCTGTGCACCCACCTCCTTTGCTAATTGCAGCCCGGCGATGCAGGCCTCATACTCTGCCTGGTTGTTGGAGG TTTGGAATGTGAACGTGAGGGAGTGTTCAATGGTGACCCCTTGACCGTCCTCTAACAGAACTCCAGCCCCACTTCCCTTTGGATTGGATGAACCGTCTAC ACAAATCGTCCACAACTGCTCAGAATGTACTGGGGCGGTCATCTCAGCCACAAAGTCAGACAGTACCTGGCTCTTGATGGCGGTTCTGGGCTCAAAACGG ATGTCGAACTGCGAAAGTTCGACGGACCAAGCTATCATTCGCCCTGCCAGCTCTGGCTTGTGCAAAATTTGCCTGATGGGTTGGTTAGTTCTGACAACCG TTGCATGGGACTGGAAATACTGGCGCAATCTCCTGGTGGTTACTAACAAGGCGTACGCCACCTTTTCAAGCTTCTGGTACCTCAGTTCGGGTCCCTGTAA GGCTTTGCTTATGAAGTACATAGGATTCTGTCCGTCCGCCGTTTCTTTTATCAGTACGGCGGCCACTGCCTCATCGGACACAGCTAGGTAGACAAACAAA ACCTCATCAGGTTCTGGCTTGGAGAGAATTGGGGGGGGGGCGGCCAAATACTGTTTAAAAGTCTGGAACGCCGCCTCACATTCAGCGGACCATTCGAACT TTTTGCTCTTCCTCAACAGCTGGAACAGAGGTAGGGACTGTTTGGCGGCGGAAGGTAGGAATCTGGATAGGGCCGCCAAGCGCCCATTCAGTTGTTGCAC TTCTTTAACTGTGTGGGGGCTCCTCATATTGATGATCGCCTGGCACTTCGCCGGATTTGCTTCAATCCCCCGACTAGTTAGCAGGAAGCCAAGGAACTTG CCGGCCTCCACCCCGAAGGTACACTTCTCCGGGTTGAGCCTCATGTTGTATTTGCGCAGCTGTTTGAAAATACTTTCCAGGATGGAGACATGATCTTCGC CGGGAAGGCTTTTGGCGATCATGTCATCCATGTAAACCTCCATATGATCCCCAATCTGTCCATCAAATACTTTGCTCATCATTCGCTGGTAAGTTGCCCC GGCATTTTTTAACCCAAAAGGCATGACTGTGTAGCAGTATGCGACTTGGTCCGTGATGAACGCCGTTTTTTCTTGGTCCGGCGGGTACATCGGAATTTGA TTGTAGCCAGAGTATGCGTCCATGAAGGAGAGGTATTGGTAACGTGAAGAATTATCCACCAAATGGTCAATATTAGGAAGAGGATATGGATCTTTAGGAC ATACCTTGTTGAGATCTGTGTAGTCTACACACATCCGCCACTTCCCGGAGGGTTTTTTTACCATTACCACGTTCGCAAGTCAGGTGGTGTATGTGATTTC TCTGAAAAAACCCGCCTCGAGCAACTCAGCAACCTTTGAGGCGACCTCTTTGATTCTGTCCGCCCCCATTTTCCTTCTTCGTTGTGCTACCGGCTTTGCA CCCGGATTTGTCGTCAGTTTGTGGCAGATGACCGAAGGATCTATGCCCGGCATATCGGCAGCTGACCAGGCAAATAGGTCGCGATTTTCTCTTAAGGAGG TTTCCAACTTCAACCTTTGTTCCGCTGGAAGAGTGCGGCCGAGGTAGACTACCTGTCCGGGGGAACGTCCCAATTGAAGTGTGATTTTTTCTCCTTCAGG TTGTGGCCGGAATTCTCCTTCATCTGCTCTGATGTCCAACTCGACCATATGTACGCCCCTAGAGTTTTTTGAGGGGGGTGTCTGTTGCTTGCTGAAATGG GGGCGGAGGCTCATCTGGTAGCAGCTTCGGGCGGAATATTGATCCCCTCGGACTGTGCAGACTTGGAGGCTGCTTGACAGGAATTTCATACACAGGTGAG GTGTGGACACGATGGCTTTCAATCTTTTTAAAGTTGGGCGCCCAACGATGGCGTTGTAGGCCGATTCGCAATGTACGACCAGGAACCTGGTCTGAATTGT TCTGCTCAGTGGGTGGTCGCCTATAGTCAGCCAGACCTCCACGTAGCCTCTAGGCGTGATGCCTTGTCTAGAGAAGCCTACTAACTGTCCGTCGTATGGT TGGAGATCTCGGTCCCGGAGTTCCATCTTTTGAAAGAGTTCCTGAAAAATGATATCCGCCGAGCTGCCCTGATCGACAAAGAGGCGACTAACCTTTTTGT TGTTCAACTTTGCTGTGATGACGAGAGGGTCATCATGCCCTCTGACGACGCCTTCATAATCACGGTCGTCAAAGGTGATGGGAGGAGACGTGTTGTGGTG TTCATGATGAGAGCTTCTGGCGGAAACATGCATCACCTCTCGGACGTACCTTTTCTGAGCGGACCTGGAGGTGCCCCATGCAGCAAATCCTCCTGAGATT GTGTTGATATCGACGGGACTTCTCTGCCTTTGATTGTCTTGGCGGCGCCTGTCGAGGTAGTCTCTGGCGACAGGACGCCGTTGATGAGCTGGGGGAGGTG ACCGTCGTCCTGTAGATTCAGGTCGACGACGTTGTGGTGATCGCCGGCGCTGTTCTAAACCTGCGATAAATCGCTGCAGGTGTCCTGCCTGAATAAGATC TTCGATGGTATCTCGAAGCTGAGTGCAATCGTTCGTCAGATGACCGAACATGCTGTGATATTCACAGTATTTGGATCTGTCCTGGGGGCCTGGCTTGGCT GGGCGTGGGCGAGGGAGTTGGACGAGGTGGGTTGTTAGGACCTCTTGCAGGATTCTTGAACGGCTGGCGTTCAAGGGTGTGTATGCGGAGTATTTGGATT TTTTGGGTTGGGGAGGTAGGTCACGTGGGTGGTCGTGTGGTCTTGGTCTTTTGGCTTCTCGAGAGGAGTGATGTGTCTGCGGTTCTGGATGGTTGTGGAT GTGGTGGGTTTCTTCGAGATTAATGAACTGTTGGGTTTTAGATCTGAGGTCTTCCATTGTGAGGTCGGTGTACTTGGCCAATTCCGTACGAAAAAGACCT TCCTGTAGTCCCATAACGAGGACGTGGACGACCACTTCTGGGCTTAGAGTGCACACTTTCATCGCCTCGGTATTAAATCGATCCAGATACGCCCTGATGG ATTCCTGAGGGACTTGGCGAATGCCGGACAGTGTGTAGGACGACCTGGGCTGTTCCTTGCTGGCTGTGAACCTTGTGTTGAAAGAAGAAGCCAGGGTCGC CCAGGTGCTGATGCTGTTCGGGGTCAGCCGTGTGAACCATTGCAGGGCTGCCTTTTTTAGAGTCAGTGGGAAAGCCCTACACATGATCGGATCAGTGGCC CCATGGAAAAGCATAGAGGCCTCAAAAGAATCTAGGTGGTCCTGCGGGTCTGTTGTTCCGTCATACTGGTCGATGTTGGTGGGGCGGGTGAAGTGCGAAG GTAATGGGCAAGCCATGATAGTGGAGGTGAAGGGGTGTCGGGCACCGCAATGATGGTGTGGGACATTTGGAGATTGGTTGGTGGGATAGGATGGGATGTA TGATTCTCCGGCTGACTCCTCACGGTGGATCTCTTGGATGGGGCGCTCGTGAGGGTTAGTGGTTTTCAGTTCTGGTTTTTGTAGTTGCTTAATGAGTTCA GCTTGTTCCTGGATTAGCCTTTCTTGGCGTTCCAGCATTTGGAGGAGTTGATGGGTGGTTGGGGGTGGTGGTTCTTGTTCGGTGTGGTGGCTTCTACTGG CTTGGTGTGATGGTTGTCTGGGTGGTGGAAGGGTACTAAGGGCAGGGTCCACTTGGCTGGGAGATAGAGCTCTGTTTCTTGTAGTCACCATGGTTGCGAG TAAGCCACAGACGGCGCCAATGTTCTTTCTCCTGAACACGAGGATATAGTAACCAATAGAACAGTGAAGGAATGACAACAGTTGGAAGAGGAAGGTGAGA GGAAGAATGTTGAGCAGCTGGTTGAAGAAGAGAAGAACTGGACCCGCCGGTGGAGGTACCTGAAAAGGTTCTTTGACGATCAAGTCAGAATATGAGCTTG AGAAAGATAGAGAGTAAGGGAAATAAGAGAGAAAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_196673; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_494406
| Blastp | Retrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 33.81% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 32.82% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019420725.1) |
| Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078.26) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |