Ll_transcript_494408

• Id Trinity: TRINITY_DN52894_c7_g1_i5
• Name Transcript: Ll_transcript_494408
• Sequence: GGCAGGCTGCCATGGAGGATGTACCGGATGAAAGGACCTGTCCAATTATCTGGGATCGCCACCTGTTCAACTGTCATGACTCTGGGCTGATAAATTGTTC CCTGGACCACTGATCTATTATTTCCAAGGCTCTTGGTGCTGGCGAGCTTGGAAAGGATGTCCGCCCGGGTGTTGTTCTCTCTTGGTACATGCTGAATGGT CGCCTCAACGAAATTGGCCATTAGTTCTTTTACTTTGATCAGGTATTTCCCGAGAAGGGGGTCTTTGACCTGGTATGTACCTGTAATCTGTGAAACGGCC AGCTGAGAGTCGCTACAAATCAAAATTTTCTGTGCACCCACCTCCTTTGCTAATTGCAGCCCGGCGATGCAGGCCTCATACTCTGCCTGGTTGTTGGAGG TTTGGAATGTGAACGTGAGGGAGTGTTCAATGGTGACCCCTTGACCGTCCTCTAACAGAACTCCAGCCCCACTTCCCTTTGGATTGGATGAACCGTCTAC ACAAATCGTCCACAACTGCTCAGAATGTACTGGGGCGGTCATCTCAGCCACAAAGTCAGACAGTACCTGGCTCTTGATGGCGGTTCTGGGCTCAAAACGG ATGTCGAACTGCGAAAGTTCGACGGACCAAGCTATCATTCGCCCTGCCAGCTCTGGCTTGTGCAAAATTTGCCTGATGGGTTGGTTAGTTCTGACAACCG TTGCATGGGACTGGAAATACTGGCGCAATCTCCTGGTGGTTACTAACAAGGCGTACGCCACCTTTTCAAGCTTCTGGTACCTCAGTTCGGGTCCCTGTAA GGCTTTGCTTATGAAGTACATAGGATTCTGTCCGTCCGCCGTTTCTTTTATCAGTACGGCGGCCACTGCCTCATCGGACACAGCTAGGTAGACAAACAAA ACCTCATCAGGTTCTGGCTTGGAGAGAATTGGGGGGGGGGCGGCCAAATACTGTTTAAAAGTCTGGAACGCCGCCTCACATTCAGCGGACCATTCGAACT TTTTGCTCTTCCTCAACAGCTGGAACAGAGGTAGGGACTGTTTGGCGGCGGAAGGTAGGAATCTGGATAGGGCCGCCAAGCGCCCATTCAGTTGTTGCAC TTCTTTAACTGTGTGGGGGCTCCTCATATTGATGATCGCCTGGCACTTCGCCGGATTTGCTTCAATCCCCCGACTAGTTAGCAGGAAGCCAAGGAACTTG CCGGCCTCCACCCCGAAGGTACACTTCTCCGGGTTGAGCCTCATGTTGTATTTGCGCAGCTGTTTGAAAATACTTTCCAGGATGGAGACATGATCTTCGC CGGGAAGGCTTTTGGCGATCATGTCATCCATGTAAACCTCCATATGATCCCCAATCTGTCCATCAAATACTTTGCTCATCATTCGCTGGTAAGTTGCCCC GGCATTTTTTAACCCAAAAGGCATGACTGTGTAGCAGTATGCGACTTGGTCCGTGATGAACGCCGTTTTTTCTTGGTCCGGCGGGTACATCGGAATTTGA TTGTAGCCAGAGTATGCGTCCATGAAGGAGAGGTATTGGTAACCTGAAGAATTATCCACCAAATGGCGAGGATATGGATCTTTAGGACATACCTTGTTGA GATCTGTGTAGTCTACACACATCCGCCACTTCCCGGAGGGTTTTTTTACCATTACCACGTTCGCAAGTCAGGTGGTGTATGTGATTTCTCTGAAAAAACC CGCCTCGAGCAACTCAGCAACCTTTGAGGCGACCTCTTTGATTCTGTCCGCCCCCATTTTCCTTCTTCGTTGTGCTACCGGCTTTGCACCCGGATTTGTC GTCAGTTTGTGGCAGATGACCGAAGGATCTATGCCCGGCATATCGGCAGCTGACCAGGCAAATAGGTCGCGATTTTCTCTTAAGGAGGTTTCCAACTTCA ACCTTTGTTCCGCTGGAAGAGTGCGGCCGAGGTAGACTACCTGTCCGGGGGAACGTCCCAATTGAAGTGTGATTTTTTCTCCTTCAGGTTGTGGCCGGAA TTCTCCTTCATCTGCTCTGATGTCCAACTCGACCATATGTACGCCCCTAGAGTTTTTTGAGGGGGGTGTCTGTTGCTTGCTGAAATGGGGGCGGAGGCTC ATCTGGTAGCAGCTTCGGGCGGAATATTGATCCCCTCGGACTGTGCAGACTTGGAGGCTGCTTGACAGGAATTTCATACACAGGTGAGGTGTGGACACGA TGGCTTTCAATCTTTTTAAAGTTGGGCGCCCAACGATGGCGTTGTAGGCCGATTCGCAATGTACGACCAGGAACCTGGTCTGAATTGTTCTGCTCAGTGG GTGGTCGCCTATAGTCAGCCAGACCTCCACGTAGCCTCTAGGCGTGATGCCTTGTCTAGAGAAGCCTACTAACTGTCCGTCGTATGGTTGGAGATCTCGG TCCCGGAGTTCCATCTTTTGAAAGAGTTCCTGAAAAATGATATCCGCCGAGCTGCCCTGATCGACAAAGAGGCGACTAACCTTTTTGTTGTTCAACTTTG CTGTGATGACGAGAGGGTCATCATGCCCTCTGACGACGCCTTCATAATCACGGTCGTCAAAGGTGATGGGAGGAGACGTGTTGTGGTGTTCATGATGAGA GCTTCTGGCGGAAACATGCATCACCTCTCGGACGTACCTTTTCTGAGCGGACCTGGAGGTGCCCCATGCAGCAAATCCTCCTGAGATTGTGTTGATATCG ACGGGACTTCTCTGCCTTTGATTGTCTTGGCGGCGCCTGTCGAGGTAGTCTCTGGCGACAGGACGCCGTTGATGAGCTGGGGGAGGTGACCGTCGTCCTG TAGATTCAGGTCGACGACGTTGTGGTGATCGCCGGCGCTGTTCTAAACCTGCGATAAATCGCTGCAGGTGTCCTGCCTGAATAAGATCTTCGATGGTATC TCGAAGCTGAGTGCAATCGTTCGTCAGATGACCGAACATGCTGTGATATTCACAGTATTTGGATCTGTCCTGGGGGCCTGGCTTGGCTGGGCGTGGGCGA GGGAGTTGGACGAGGTGGGTTGTTAGGACCTCTTGCAGGATTCTTGAACGGCTGGCGTTCAAGGGTGTGTATGCGGAGTATTTGGATTTTTTGGGTTGGG GAGGTAGGTCACGTGGGTGGTCGTGTGGTCTTGGTCTTTTGGCTTCTCGAGAGGAGTGATGTGTCTGCGGTTCTGGATGGTTGTGGATGTGGTGGGTTTC TTCGAGATTAATGAACTGTTGGGTTTTAGATCTGAGGTCTTCCATTGTGAGGTCGGTGTACTTGGCCAATTCCGTACGAAAAAGACCTTCCTGTAGTCCC ATAACGAGGACGTGGACGACCACTTCTGGGCTTAGAGTGCACACTTTCATCGCCTCGGTATTAAATCGATCCAGATACGCCCTGATGGATTCCTGAGGGA CTTGGCGAATGCCGGACAGTGTGTAGGACGACCTGGGCTGTTCCTTGCTGGCTGTGAACCTTGTGTTGAAAGAAGAAGCCAGGGTCGCCCAGGTGCTGAT GCTGTTCGGGGTCAGCCGTGTGAACCATTGCAGGGCTGCCTTTTTTAGAGTCAGTGGGAAAGCCCTACACATGATCGGATCAGTGGCCCCATGGAAAAGC ATAGAGGCCTCAAAAGAATCTAGGTGGTCCTGCGGGTCTGTTGTTCCGTCATACTGGTCGATGTTGGTGGGGCGGGTGAAGTGCGAAGGTAATGGGCAAG CCATGATAGTGGAGGTGAAGGGGTGTCGGGCACCGCAATGATGGTGTGGGACATTTGGAGATTGGTTGGTGGGATAGGATGGGATGTATGATTCTCCGGC TGACTCCTCACGGTGGATCTCTTGGATGGGGCGCTCGTGAGGGTTAGTGGTTTTCAGTTCTGGTTTTTGTAGTTGCTTAATGAGTTCAGCTTGTTCCTGG ATTAGCCTTTCTTGGCGTTCCAGCATTTGGAGGAGTTGATGGGTGGTTGGGGGTGGTGGTTCTTGTTCGGTGTGGTGGCTTCTACTGGCTTGGTGTGATG GTTGTCTGGGTGGTGGAAGGGTACTAAGGGCAGGGTCCACTTGGCTGGGAGATAGAGCTCTGTTTCTTGTAGTCACCATGGTTGCGAGTAAGCCACAGAC GGCGCCAATGTTCTTTCTCCTGAACACGAGGATATAGTAACCAATAGAACAGTGAAGGAATGACAGCAGTTGGAAGAGGAGACTTGAAGGAAGAGGAAGG TGAGAGGAAAAATGTTGAGCAGCTGGTTGAAGAAGAGAAGAACTGGACCCGCCGGTGGAGGTACCTGAAAAGGTTCTCCGACGATCAAGTCAGTATGTGA GCTTGAATATGTTTTATGATAGGAGAAGGAGAGTAGCAGGGA
• Tissue: pods
• Gene name: LI_gene_196673;
• Additional information: -

Expression of Ll_transcript_494408

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0.1
• PS2: 0.2
• PS3: 0.2
• PW1: 0
• PW2: 0.2
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_494408

• Blastp: Retrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 33.24% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 32.31% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019420725.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078.26)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;