Ll_transcript_370539

• Id Trinity: TRINITY_DN52993_c0_g1_i1
• Name Transcript: Ll_transcript_370539
• Sequence: AAGTGATATAAAAAAACATATATAATTGGGCTGGTACTAAAAAGAACCTCGTTCGTCACTGATGTTAGTTGGGCTAGTGGCATAAACCCTAAACCCTCCC TAAGACCTCTTCGTCTCTTTCTGTTCGGAACGCTTCAACATTGTTAATCTCCCCAGACATGAATCGCGTGAAAGCAATTGCAGCTTCCCTCAGAAACCTT GACACGTCACTCACTACTCGAGTTCTCGCAACTCGGTCCCTATATCTCACTCGGAACCAGGTGACTCACTTCTCTCCCCATTCTCCACCACCCCTTTTGC CTCCTCTTCACGATTTTCGTTTTCACCAAAGAATCTACTTTTCTTCCAAACCCAACTCCATTGTGGAGCTTGTTTTGACCAACGATTGGTCCCAAGATTT AGAAATCGAGTTAGAAAAATGCTCCTCTTCCCTGACCCATGAGACTGTTCTTTACGTTTTGAAGAGATTGGATAAAAACCCTGAAAAAGCTTCCAACTTT TTCAATTGGGTTAGTGAGAAAGAGTGGTTTACACCAAGTTCATCACTGTATAGCTTAATTGTTAGGATCTTAGCATATAAGGAGATGATGAAACAGTTTT GGATTACTCTAAGGGTGATGAAGGAAAAAGGATTTTATCTTGATGAAGAGACATACCTTACAATTTTAATTGGTTTTAAAAAGGCGAAGCTGAACAGTGA TGCCGTTGCCCTGACCCATTTCTATGATCGGATGCTTCAGGATAATGCAATGCAAAGTAATGTCACCAAGGTGGTTGGTATCATTAAAGGGTCAGAATGG AATGATAGGGTTATGAATGAATTGGCACAGGCTAAACTTCAACTCTGTGATAATTTCGTTATAAGGGTTTTGAGAGAGCTTCGAAGTCAACCTTTGAAGG CTTTTAAGTTCTTTCGTTGGGCTGGGAAGCAATCTGGTTATGAGAACAATACAGTAACTTATAATGCAATAGCAAGAGTTCTTGCAAGGGAAGGATCAGT TCAGGAGTTTTGGAATATTATTGAGGAGATGAGAAGTGTAGGTCATGGATTGGATATCGATACTTACATAAAAATATCAAGGCAACTTCAAAAGAATAAG TTGATGGAGGATGCTGTCAAGCTTTATGAGCTTATGATGGATAGCTCATATAAGCCATCAATTCAGGATTGCAGTATTCTTTTGAAGAGTATCTCTGTTG GCGATAAGCCAAACCTGGATTTGGTGTTCAGGGTAGCAAAGAAATATGAGTCAACCGGGCATACTCTCACCAAGGCAATCTATGATGGAATCCATAGGTC ATTGACAAGTGTTGGGAAATTTGACGAAGCTGAAAATATTGTCCAGACTATGAGAAATGCTGGGTTTGAGCCTGATAACATCACATACAGCCAACTGGTT TTTGGACTTTGTAAGATGAAGAGGTTTGAAGAAGCATGTAAGGTACTAGAGGAGATGGAATCTTGTGGGTGCATCCCTGATATCAAGACTTGGACCATCT TGATCCAAGGGCATTGCGCAGGGAATGAAGTAGATCAGGCATTACTTTGTTTTGCTAAGATGATTGAAAAGGGATGCGATGCAGACGCTGATTTGTTGGA AGTTTTGCTTGATGGTTTTCTTAGTCAAAATAGAATAGATGGCGCATACAAGTTGTTTGTAGAGGTAAGTAGCAAGTGCCGTATTTCTCCATGGCAAGCT ACATATAAGAAGCTGATCGAAAAGCTGCTAGGGGTCCAGAAGTTTGAGGAGGCACTTGATCTTCTTAGTTTGATGAAGAAACACAACTACCCTCCTTTCC ATGAACCCTTTATGTCTTATATTTCCAAGTTTGGGACGGTGGAGGATGCTGCAGAATTTCTAAAGGCATTGAGCACAAAAAGTTACCCTGCCGAAGCAGT TTACTTCAAGGTTTTTGAGTCCTTATTCAAAGAAGGTAGACACTCCGAGGCCAAAGATCTATTGTACAAGTGTCCTCACCATATACGTAATCATAAAAAA ATCTCTGAATTGTTTGGTTAACCAGAGTCACTTGTCTGCTACGTGATTCCGAGATTTTCCCCATTATGTATCTTATCTTTCTTCAAATGGTTGATATTAT CAACTTTGGCCAAGCTGTTAGGTAGGTTTGCTCATTGCTAGTTGAAATCTCTTGGGATAAAAAGATTTGATGTCAGGTAACCTTCATGGTTGAAATTGTA AGAGTTGTTCATGTATGACCAGTAATGTTATCATTACTAGCAATTCTTTTAAAATATTTGTCAGTTCCACCTTTTATGTTTTTT
• Tissue: pods
• Gene name: LI_gene_196828;
• Additional information: details;

Expression of Ll_transcript_370539

FPKM

• PAB: 0.1
• PNAB: 3.9
• PS1: 2
• PS2: 1.7
• PS3: 2.6
• PW1: 1.2
• PW2: 1.1
• PW3: 0.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_370539

• Blastp: Pentatricopeptide repeat-containing protein At3g48250, chloroplastic from Arabidopsis with 54.7% of identity
• Blastx: Pentatricopeptide repeat-containing protein At3g48250, chloroplastic from Arabidopsis with 54.97% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT3G48250)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019464696.1)
• Pfam: PPR repeat (PF01535.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;