Protein Coding Transcripts

Showing 1,281-1,300 of 267,349 items.
#ID TranscriptLuluDB transcriptORF TypeBlastp annotationsBlastx annotationsPfam annotationsRfam annotationsEggnog annotationsMirBase annotationsKegg accesionsCantataDB accesionsNCBI protein accesionsBlast GO accesionsPfam GO accesions 
  
1281TRINITY_DN35573_c0_g1_i1Ll_transcript_478867completeDEAD-box ATP-dependent RNA helicase 22 from Arabidopsis with 60.12% of identityDEAD-box ATP-dependent RNA helicase 22 from Oryza sativa with 57.91% of identityDEAD/DEAH box helicase (PF00270.28)-ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1 5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4 U6 base-pairing interaction in the U4 U6 U5 snRNP, facilitating the first covalent step of splicing(ENOG410XNVG)-AT1G59990 (ath)CNT0001390XP_019439193.1GO:0009507GO:0003676
1282TRINITY_DN35573_c0_g1_i2Ll_transcript_478868completeDEAD-box ATP-dependent RNA helicase 22 from Arabidopsis with 64.71% of identityDEAD-box ATP-dependent RNA helicase 22 from Oryza sativa with 58.1% of identityHelicase conserved C-terminal domain (PF00271.30)-ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1 5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4 U6 base-pairing interaction in the U4 U6 U5 snRNP, facilitating the first covalent step of splicing(ENOG410XNVG)-AT1G59990 (ath)CNT0001390XP_019439193.1GO:0009507-
1283TRINITY_DN35580_c0_g1_i1Ll_transcript_478796completeBasic blue protein from Arabidopsis with 56.59% of identityBasic blue protein from Cucumis with 65.62% of identityPlastocyanin-like domain (PF02298.16)-Basic blue(ENOG410YPS7)-AT2G02850 (ath)-XP_019436694.1GO:0046658GO:0009055
1284TRINITY_DN35582_c0_g1_i1Ll_transcript_478787completePutative pentatricopeptide repeat-containing protein At1g10330 from Arabidopsis with 48.48% of identityPutative pentatricopeptide repeat-containing protein At1g10330 from Arabidopsis with 48.48% of identityPPR repeat (PF01535.19)-Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)-AT1G10330 (ath)-XP_019465178.1GO:0043231-
1285TRINITY_DN35583_c0_g1_i1Ll_transcript_478815complete--------XP_004497272.1--
1286TRINITY_DN35583_c0_g1_i2Ll_transcript_478816completePrecursor of CEP16 from Arabidopsis with 58.33% of identity---NA(ENOG4110853)-AT1G49800 (ath)-XP_004497272.1GO:0048046-
1287TRINITY_DN35592_c0_g1_i1Ll_transcript_478876internalRetrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 42.08% of identityRetrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 42.08% of identity------XP_019430788.1GO:0004190-
1288TRINITY_DN35596_c0_g1_i1Ll_transcript_478808completePentatricopeptide repeat-containing protein At1g62350 from Arabidopsis with 75.41% of identityPentatricopeptide repeat-containing protein At1g62350 from Arabidopsis with 80.7% of identity--Pentatricopeptide repeat-containing protein(ENOG410YBWY)-AT1G62350 (ath)-XP_019459267.1GO:0043231-
1289TRINITY_DN35596_c0_g1_i2Ll_transcript_478809completePentatricopeptide repeat-containing protein At1g62350 from Arabidopsis with 75.77% of identityPentatricopeptide repeat-containing protein At1g62350 from Arabidopsis with 80.11% of identityPPR repeat (PF01535.19)-Pentatricopeptide repeat-containing protein(ENOG410YBWY)-AT1G62350 (ath)-XP_019459267.1GO:0043231-
1290TRINITY_DN35599_c0_g1_i1Ll_transcript_478805complete--------XP_020211338.1--
1291TRINITY_DN35608_c0_g1_i1Ll_transcript_3585595prime_partial--------XP_019420494.1--
1292TRINITY_DN35611_c0_g1_i1Ll_transcript_358560completeProbable ribosomal protein S11, mitochondrial from Arabidopsis with 61.84% of identityProbable ribosomal protein S11, mitochondrial from Arabidopsis with 56.4% of identityRibosomal protein S11 (PF00411.18)-Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome (By similarity)(COG0100)-AT1G31817 (ath)-XP_019449420.1GO:0005763GO:0003735
1293TRINITY_DN35611_c0_g1_i2Ll_transcript_358561completeProbable ribosomal protein S11, mitochondrial from Arabidopsis with 56.67% of identityProbable ribosomal protein S11, mitochondrial from Arabidopsis with 55.81% of identityRibosomal protein S11 (PF00411.18)-Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome (By similarity)(COG0100)-AT1G31817 (ath)-XP_019449420.1GO:0005763GO:0003735
1294TRINITY_DN35614_c0_g1_i1Ll_transcript_3585445prime_partial-30S ribosomal protein 3, chloroplastic from Spinacia with 89.25% of identity------XP_019456236.1--
1295TRINITY_DN35614_c0_g1_i2Ll_transcript_3585455prime_partial30S ribosomal protein 3, chloroplastic from Spinacia with 63.4% of identity30S ribosomal protein 3, chloroplastic from Spinacia with 90% of identityPlastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) (PF04839.12)-----XP_019456237.1GO:0009507GO:0003735
1296TRINITY_DN35618_c0_g1_i1Ll_transcript_358599completePentatricopeptide repeat-containing protein At4g38150 from Arabidopsis with 52.27% of identityPentatricopeptide repeat-containing protein At4g38150 from Arabidopsis with 51.62% of identityPPR repeat (PF01535.19)-Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)-AT4G38150 (ath)-XP_019421444.1GO:0043231-
1297TRINITY_DN35618_c0_g1_i2Ll_transcript_358600completePentatricopeptide repeat-containing protein At4g38150 from Arabidopsis with 52.27% of identityPentatricopeptide repeat-containing protein At4g38150 from Arabidopsis with 51.62% of identityPPR repeat (PF01535.19)-Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)-AT4G38150 (ath)-XP_019421444.1GO:0043231-
1298TRINITY_DN35619_c0_g1_i1Ll_transcript_3585713prime_partial-Glycine-rich protein 2 from Nicotiana with 58.44% of identity------XP_019424476.1--
1299TRINITY_DN35619_c0_g2_i1Ll_transcript_358572completeDNA-binding protein HEXBP from Leishmania with 40.52% of identityCold shock protein 1 from Arabidopsis with 35.14% of identityZinc knuckle (PF00098.22)-zinc finger(COG5082)---XP_019424476.1GO:0005634GO:0003676
1300TRINITY_DN35620_c0_g1_i1Ll_transcript_3585635prime_partialUncharacterized N-acetyltransferase p20 from Bacillus with 28.82% of identityUncharacterized N-acetyltransferase p20 from Bacillus with 28.82% of identityAcetyltransferase (GNAT) domain (PF13302.6)--acetyltransferase(COG1670)---XP_019422096.1GO:0008080GO:0008080